You can target both indexes in a single query, so as to retrieve results of type A or B in the same result list:
FullTextQuery query = fullTextEntityManager.createQuery( luceneQuery, A.class, B.class );
List<Object> results = query.getResultList(); // Contains some objects of type A and some objects of type B
But if you really want a join, then no, Hibernate Search does not provide that feature. Multi-entity queries are generally achieved with @IndexedEmbedded, by embedding other entities in an entity’s index. See this section of the documentation.